If it stops after a while, then I suspect it isn't the hard drive.
How old is the MBP? It could be a dry joint or something around the sound chip and where it connects to the speakers. As it warms up, the contact gets better and it stops crackling.
Without observing it, it isn't easy to diagnose, but that would be a best-guess with what you've said so far.
Is there an Apple Store in your area? It might be worth getting an appointment and taking it in. Not an option for me, I need to drive through 4 countries and take a ferry to get to my nearest Apple Store...
